Annotation of co-expression genes

PH01002063G0150's details annotation

1.Annotation

ICBR annotation: phenylalanyl-tRNA synthetase beta chain, putative, expressed

Blast result AT1G72550 : 6.00E-131
Blast annotation: tRNA synthetase beta subunit family protein

2.Location

Scaffold: PH01002063
Strand: +

RegionStartEnd
gene142291148871
mRNA142291148871
exon142291143327
exon144510144551
exon144708144749
exon144904144980
exon145527145617
exon145717145884
exon146154146279
exon146381146491
exon146609146743
exon147310147384
exon147672147779
exon147867147953
exon148042148128
exon148641148871
CDS143124143327
CDS144510144551
CDS144708144749
CDS144904144980
CDS145527145617
CDS145717145884
CDS146154146279
CDS146381146491
CDS146609146743
CDS147310147384
CDS147672147779
CDS147867147953
CDS148042148128
CDS148641148709

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000835phenylalanyl-tRNA aminoacylation,
aminoacyl-tRNA ligase activity,
phenylalanine-tRNA ligase activity,
tRNA binding,
tRNA aminoacylation,
Aminoacyl-tRNA_biosynthesis
nucleotide binding,
magnesium ion binding,
cytoplasm,
GeBP Transcription_Regulator(from PlantTFDB)
RNA binding,
tRNA aminoacylation for protein translation,
ATP binding,
coexpression networkCFinderM001647phenylalanyl-tRNA aminoacylation,
phenylalanine-tRNA ligase activity,
tRNA binding,
tRNA aminoacylation,
Aminoacyl-tRNA_biosynthesis
aminoacyl-tRNA ligase activity,
fumarate metabolic process,
nucleotide binding,
magnesium ion binding,
tricarboxylic acid cycle enzyme complex,
fumarate hydratase activity,
cytoplasm,
mitochondrial outer membrane,
RNA binding,
tricarboxylic acid cycle,
Carbon_fixation_pathways_in_prokaryotes
Citrate_cycle_(TCA_cycle)
lyase activity,
coexpression networkCFinderM001759Citrate_cycle_(TCA_cycle)
tricarboxylic acid cycle enzyme complex,
phenylalanyl-tRNA aminoacylation,
fumarate metabolic process,
tricarboxylic acid cycle,
tRNA aminoacylation,
phenylalanine-tRNA ligase activity,
fumarate hydratase activity,
tRNA binding,
Carbon_fixation_pathways_in_prokaryotes
Aminoacyl-tRNA_biosynthesis
Pyruvate_metabolism
Glycolysis_/_Gluconeogenesis
coexpression networkCFinderM001892phenylalanyl-tRNA aminoacylation,
Aminoacyl-tRNA_biosynthesis
tRNA aminoacylation,
phenylalanine-tRNA ligase activity,
WRKY Transcription_Regulator(from PlantTFDB)
tRNA binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03484.14B5190258
PF01409.19tRNA-synt_2d265460

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Aminoacyl-tRNA biosynthesisphenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]ko00970K01890

10.Gene Ontology

GO AccessionGO Annotation
GO:0000049tRNA binding
GO:0000166nucleotide binding
GO:0000287magnesium ion binding
GO:0003723RNA binding
GO:0004812aminoacyl-tRNA ligase activity
GO:0004826phenylalanine-tRNA ligase activity
GO:0005524ATP binding
GO:0005737cytoplasm
GO:0006432phenylalanyl-tRNA aminoacylation
GO:0043039tRNA aminoacylation

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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