PH01002098G0210's details annotation
1.Annotation
ICBR annotation: integral membrane protein, putative, expressed
Blast result AT2G01770 : 3.60E-40
Blast annotation: vacuolar iron transporter 1
2.Location
Scaffold: PH01002098
Strand: +
| Region | Start | End |
| gene | 155033 | 156527 |
| mRNA | 155033 | 156527 |
| exon | 155033 | 155278 |
| exon | 155664 | 155778 |
| exon | 155962 | 156076 |
| exon | 156171 | 156527 |
| CDS | 155183 | 155278 |
| CDS | 155664 | 155778 |
| CDS | 155962 | 156076 |
| CDS | 156171 | 156471 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000469 | CCAAT-binding factor complex, NF-YA Transcription_Regulator(from PlantTFDB) response to biotic stimulus, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01988.18 | VIT1 | 34 | 110 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.