Annotation of co-expression genes

PH01002117G0160's details annotation

1.Annotation

ICBR annotation: receptor-like protein kinase precursor, putative, expressed

Blast result AT1G17750 : 6.00E-175
Blast annotation: PEP1 receptor 2

2.Location

Scaffold: PH01002117
Strand: +

RegionStartEnd
gene126956132145
mRNA126956132145
exon126956127951
exon128031131282
exon131645132145
CDS127836127951
CDS128031131282
CDS131645131702

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000222signal recognition particle,
acetyl-CoA_biosynthetic_process_from_pyruvate
RLK-Pelle_LRR-XI-1 (from iTAK)
SRP-dependent cotranslational protein targeting to membrane,
pyruvate dehydrogenase (acetyl-transferring) activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13855.5LRR_8119179
PF13855.5LRR_8215273
PF13855.5LRR_8528588
PF00069.24Pkinase8211116

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005515protein binding
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.