PH01002135G0360's details annotation
1.Annotation
ICBR annotation: histone-lysine N-methyltransferase, putative, expressed
Blast result AT2G22740 : 2.50E-77
Blast annotation: SU(VAR)3-9 homolog 6
2.Location
Scaffold: PH01002135
Strand: +
| Region | Start | End |
| gene | 245713 | 247200 |
| mRNA | 245713 | 247200 |
| exon | 245713 | 245992 |
| exon | 246168 | 246255 |
| exon | 246630 | 247200 |
| CDS | 245920 | 245992 |
| CDS | 246168 | 246255 |
| CDS | 246630 | 247200 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000746 | CMGC_DYRK-YAK (from iTAK) TKL-Pl-6 (from iTAK) |
| coexpression network | CFinderM001668 | poly(A)+ mRNA export from nucleus, SET Transcription_Regulator(from iTAK) histone_lysine_methylation large ribosomal subunit, nuclear pore, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | SET |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00856.27 | SET | 81 | 213 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0005634 | nucleus |
| GO:0008270 | zinc ion binding |
| GO:0018024 | histone-lysine N-methyltransferase activity |
| GO:0034968 | histone lysine methylation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.