PH01002161G0220's details annotation
1.Annotation
ICBR annotation: powdery mildew resistant protein 5, putative, expressed
Blast result AT1G29050 : 2.00E-107
Blast annotation: TRICHOME BIREFRINGENCE-LIKE 38
2.Location
Scaffold: PH01002161
Strand: -
| Region | Start | End |
| gene | 161621 | 164933 |
| mRNA | 161621 | 164933 |
| exon | 161621 | 162081 |
| exon | 162425 | 162583 |
| exon | 162681 | 162856 |
| exon | 163177 | 163245 |
| exon | 164230 | 164413 |
| exon | 164554 | 164933 |
| CDS | 161781 | 162081 |
| CDS | 162425 | 162583 |
| CDS | 162681 | 162856 |
| CDS | 163177 | 163245 |
| CDS | 164230 | 164413 |
| CDS | 164554 | 164846 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000013 | cellulose biosynthetic process, cellulose synthase (UDP-forming) activity, response to oxidative stress, extracellular polysaccharide biosynthetic process, hydrolase activity, hydrolyzing O-glycosyl compounds, carbohydrate metabolic process, |
| coexpression network | CFinderM000784 | carbohydrate metabolic process, GH3 Glycoside_Hydrolases hydrolase activity, hydrolyzing O-glycosyl compounds, integral to membrane, polygalacturonase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14416.5 | PMR5N | 42 | 91 |
| PF13839.5 | PC-Esterase | 96 | 388 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.