PH01002169G0400's details annotation
1.Annotation
ICBR annotation: synthase, putative, expressed
Blast result AT1G63000 : 4.00E-107
Blast annotation: nucleotide-rhamnose synthase/epimerase-reductase
2.Location
Scaffold: PH01002169
Strand: +
| Region | Start | End |
| gene | 235701 | 240010 |
| mRNA | 235701 | 240010 |
| exon | 235701 | 236267 |
| exon | 238227 | 238454 |
| exon | 239482 | 240010 |
| CDS | 235809 | 236267 |
| CDS | 238227 | 238454 |
| CDS | 239482 | 239934 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | phe-miR167 | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000013 | cellulose biosynthetic process, cellulose synthase (UDP-forming) activity, response to oxidative stress, extracellular polysaccharide biosynthetic process, hydrolase activity, hydrolyzing O-glycosyl compounds, carbohydrate metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04321.16 | RmlD_sub_bind | 17 | 189 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008831 | dTDP-4-dehydrorhamnose reductase activity |
| GO:0045226 | extracellular polysaccharide biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.