PH01002278G0200's details annotation
1.Annotation
ICBR annotation: cat eye syndrome critical region protein 5 precursor, putative, expressed
Blast result AT3G45740 : 6.60E-34
Blast annotation: hydrolase family protein / HAD-superfamily protein
2.Location
Scaffold: PH01002278
Strand: +
| Region | Start | End |
| gene | 128822 | 130430 |
| mRNA | 128822 | 130430 |
| exon | 128822 | 129514 |
| exon | 129830 | 129925 |
| exon | 130059 | 130126 |
| exon | 130203 | 130430 |
| CDS | 129512 | 129514 |
| CDS | 129830 | 129925 |
| CDS | 130059 | 130126 |
| CDS | 130203 | 130395 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000231 | NAD biosynthetic process, nucleotide-excision repair, protein folding, histone_lysine_methylation |
| coexpression network | CFinderM000851 | CMGC_GSK (from iTAK) regulation_of_DNA-templated_transcription,_elongation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.