Annotation of co-expression genes

PH01002324G0120's details annotation

1.Annotation

ICBR annotation: RNA recognition motif containing protein, putative, expressed

Blast result AT3G04500 : 1.60E-75
Blast annotation: RNA-binding (RRM/RBD/RNP motifs) family protein

2.Location

Scaffold: PH01002324
Strand: +

RegionStartEnd
gene7051972290
mRNA7051972290
exon7051971048
exon7144571542
exon7203172290
CDS7064071048
CDS7144571542
CDS7203172138

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000993protein phosphatase type 2A complex,
protein phosphatase type 2A regulator activity,
mRNA_surveillance_pathway
Ribosome_biogenesis_in_eukaryotes
signal transduction,
coexpression networkCFinderM001319protein methyltransferase activity,
urease activity,
nickel cation binding,
dephosphorylation,
nitrogen compound metabolic process,
protein methylation,
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds,
Glycosylphosphatidylinositol(GPI)-anchor_biosynthesis
protein tyrosine phosphatase activity,
protein tyrosine/serine/threonine phosphatase activity,
RNA processing,
protein dephosphorylation,
Arginine_and_proline_metabolism
phosphatase activity,
Purine_metabolism
coexpression networkCFinderM001490protein phosphatase type 2A complex,
Others Transcription_Regulator(from iTAK)
protein phosphatase type 2A regulator activity,
translational initiation,
RNA_transport
mRNA_surveillance_pathway
coexpression networkCFinderM001571protein phosphatase type 2A complex,
Others Transcription_Regulator(from iTAK)
mRNA_surveillance_pathway
protein phosphatase type 2A regulator activity,
RNA methyltransferase activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00076.21RRM_1141211

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0003676nucleic acid binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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