PH01002348G0040's details annotation
1.Annotation
ICBR annotation: OsFBK20 - F-box domain and kelch repeat containing protein, expressed
Blast result AT5G42350 : 4.30E-79
Blast annotation: Galactose oxidase/kelch repeat superfamily protein
2.Location
Scaffold: PH01002348
Strand: +
| Region | Start | End |
| gene | 14494 | 19901 |
| mRNA | 14494 | 19901 |
| exon | 14494 | 19901 |
| CDS | 16571 | 17617 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000357 | RNA_degradation steroid biosynthetic process, S-adenosylmethionine-dependent methyltransferase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01344.24 | Kelch_1 | 1 | 48 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.