PH01002350G0160's details annotation
1.Annotation
ICBR annotation: metallo-beta-lactamase, putative, expressed
Blast result AT5G23880 : 0.00E+00
Blast annotation: cleavage and polyadenylation specificity factor 100
2.Location
Scaffold: PH01002350
Strand: +
| Region | Start | End |
| gene | 116400 | 125797 |
| mRNA | 116400 | 125797 |
| exon | 116400 | 116863 |
| exon | 118210 | 118378 |
| exon | 118543 | 118639 |
| exon | 118714 | 118840 |
| exon | 119507 | 119621 |
| exon | 119705 | 119856 |
| exon | 120713 | 120770 |
| exon | 120833 | 120940 |
| exon | 121412 | 121664 |
| exon | 122024 | 122205 |
| exon | 122523 | 122618 |
| exon | 122726 | 122824 |
| exon | 123269 | 123400 |
| exon | 123739 | 123783 |
| exon | 124333 | 124497 |
| exon | 124886 | 124960 |
| exon | 125144 | 125797 |
| CDS | 116715 | 116863 |
| CDS | 118210 | 118378 |
| CDS | 118543 | 118639 |
| CDS | 118714 | 118840 |
| CDS | 119507 | 119621 |
| CDS | 119705 | 119856 |
| CDS | 120713 | 120770 |
| CDS | 120833 | 120940 |
| CDS | 121412 | 121664 |
| CDS | 122024 | 122205 |
| CDS | 122523 | 122618 |
| CDS | 122726 | 122824 |
| CDS | 123269 | 123400 |
| CDS | 123739 | 123783 |
| CDS | 124333 | 124497 |
| CDS | 124886 | 124960 |
| CDS | 125144 | 125242 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001678 | mRNA_cleavage_and_polyadenylation_specificity_factor_complex mRNA cleavage, protein retention in ER lumen, mRNA_polyadenylation RNA metabolic process, regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity ER retention sequence binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF16661.4 | Lactamase_B_6 | 22 | 183 |
| PF10996.7 | Beta-Casp | 210 | 333 |
| PF07521.11 | RMMBL | 502 | 563 |
| PF13299.5 | CPSF100_C | 614 | 703 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| mRNA surveillance pathway | cleavage and polyadenylation specificity factor subunit 2 | ko03015 | K14402 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005847 | mRNA cleavage and polyadenylation specificity factor complex |
| GO:0006378 | mRNA polyadenylation |
| GO:0006379 | mRNA cleavage |
| GO:0016787 | hydrolase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.