PH01002373G0080's details annotation
1.Annotation
ICBR annotation: ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
Blast result AT2G22310 : 2.00E-162
Blast annotation: ubiquitin-specific protease 4
2.Location
Scaffold: PH01002373
Strand: +
| Region | Start | End |
| gene | 54951 | 62881 |
| mRNA | 54951 | 62881 |
| exon | 54951 | 58067 |
| exon | 59859 | 59975 |
| exon | 60786 | 60884 |
| exon | 61228 | 61413 |
| exon | 61497 | 61678 |
| exon | 62198 | 62881 |
| CDS | 57822 | 58067 |
| CDS | 59859 | 59975 |
| CDS | 60786 | 60884 |
| CDS | 61228 | 61413 |
| CDS | 61497 | 61678 |
| CDS | 62198 | 62597 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000238 | Inositol_phosphate_metabolism Phosphatidylinositol_signaling_system Phagosome Ribosome_biogenesis_in_eukaryotes |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00443.28 | UCH | 66 | 402 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004221 | ubiquitin thiolesterase activity |
| GO:0006511 | ubiquitin-dependent protein catabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.