PH01002385G0030's details annotation
1.Annotation
ICBR annotation: eukaryotic translation initiation factor 2 subunit beta, putative, expressed
Blast result AT5G20920 : 9.90E-93
Blast annotation: eukaryotic translation initiation factor 2 beta subunit
2.Location
Scaffold: PH01002385
Strand: -
| Region | Start | End |
| gene | 22225 | 26972 |
| mRNA | 22225 | 26972 |
| exon | 22225 | 23025 |
| exon | 23667 | 23752 |
| exon | 23941 | 24083 |
| exon | 24189 | 24334 |
| exon | 24721 | 24945 |
| exon | 25041 | 25096 |
| exon | 25174 | 25279 |
| exon | 26566 | 26972 |
| CDS | 22954 | 23025 |
| CDS | 23667 | 23752 |
| CDS | 23941 | 24083 |
| CDS | 24189 | 24334 |
| CDS | 24721 | 24945 |
| CDS | 25041 | 25096 |
| CDS | 25174 | 25279 |
| CDS | 26566 | 26610 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001214 | PLATZ Transcription_Regulator(from iTAK) RLK-Pelle_LRR-VII-2 (from iTAK) protein complex, microtubule, microtubule-based process, translational initiation, protein polymerization, RLK-Pelle_DLSV (from iTAK) Phagosome RNA_transport |
| coexpression network | CFinderM001226 | protein complex, microtubule, translational initiation, microtubule-based process, protein polymerization, GTP_catabolic_process Phagosome RNA_transport |
| coexpression network | CFinderM001284 | Alanine,_aspartate_and_glutamate_metabolism RNA_transport arginine biosynthetic process via ornithine, argininosuccinate lyase activity, translational initiation, Arginine_and_proline_metabolism |
| coexpression network | CFinderM001843 | Valine,_leucine_and_isoleucine_degradation Valine,_leucine_and_isoleucine_biosynthesis PLATZ Transcription_Regulator(from iTAK) protein complex, microtubule, TRAF Transcription_Regulator(from iTAK) branched chain family amino acid metabolic process, branched-chain-amino-acid transaminase activity, protein polymerization, translational initiation, microtubule-based process, Pantothenate_and_CoA_biosynthesis structural constituent of cytoskeleton, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01873.16 | eIF-5_eIF-2B | 164 | 272 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| RNA transport | translation initiation factor 2 subunit 2 | ko03013 | K03238 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003743 | translation initiation factor activity |
| GO:0006413 | translational initiation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.