PH01002392G0140's details annotation
1.Annotation
ICBR annotation: VHS and GAT domain containing protein, expressed
Blast result AT1G21380 : 4.00E-114
Blast annotation: Target of Myb protein 1
2.Location
Scaffold: PH01002392
Strand: +
| Region | Start | End |
| gene | 80972 | 88083 |
| mRNA | 80972 | 88083 |
| exon | 80972 | 81606 |
| exon | 82816 | 82894 |
| exon | 83220 | 83318 |
| exon | 83417 | 83530 |
| exon | 83763 | 83935 |
| exon | 85358 | 85439 |
| exon | 86339 | 86424 |
| exon | 86507 | 86784 |
| exon | 86962 | 88083 |
| CDS | 81500 | 81606 |
| CDS | 82816 | 82894 |
| CDS | 83220 | 83318 |
| CDS | 83417 | 83530 |
| CDS | 83763 | 83935 |
| CDS | 85358 | 85439 |
| CDS | 86339 | 86424 |
| CDS | 86507 | 86784 |
| CDS | 86962 | 87728 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000006 | CAMK_CDPK (from iTAK) transporter activity, transport, transmembrane transport, polygalacturonase activity, |
| coexpression network | CFinderM000238 | Inositol_phosphate_metabolism Phosphatidylinositol_signaling_system Phagosome Ribosome_biogenesis_in_eukaryotes |
| coexpression network | CFinderM001658 | Phosphatidylinositol_signaling_system Inositol_phosphate_metabolism phosphatidylinositol metabolic process, phosphatidylinositol phosphate kinase activity, Phagosome cellular protein metabolic process, TKL-Pl-6 (from iTAK) |
| coexpression network | CFinderM001683 | Steroid_biosynthesis RLK-Pelle_WAK_LRK10L-1 (from iTAK) TKL-Pl-6 (from iTAK) sterol_24-C-methyltransferase_activity protein serine/threonine kinase activity, protein phosphorylation, steroid biosynthetic process, single-stranded DNA binding, protein kinase activity, transferase activity, transferring phosphorus-containing groups, TKL-Pl-4 (from iTAK) GARP-G2-like Transcription_Regulator(from iTAK) G2-like Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001854 | HSF Transcription_Regulator(from PlantTFDB) fatty-acyl-CoA binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00790.18 | VHS | 9 | 133 |
| PF03127.13 | GAT | 200 | 275 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005622 | intracellular |
| GO:0006886 | intracellular protein transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.