PH01002401G0310's details annotation
1.Annotation
ICBR annotation: galactosyltransferase, putative, expressed
Blast result AT1G05170 : 2.00E-120
Blast annotation: Galactosyltransferase family protein
2.Location
Scaffold: PH01002401
Strand: +
| Region | Start | End |
| gene | 213227 | 220195 |
| mRNA | 213227 | 220195 |
| exon | 213227 | 214729 |
| exon | 215304 | 215475 |
| exon | 216003 | 216037 |
| exon | 216816 | 216856 |
| exon | 217244 | 217618 |
| exon | 217790 | 217862 |
| exon | 217955 | 218075 |
| exon | 218330 | 218417 |
| exon | 218494 | 218619 |
| exon | 218726 | 218930 |
| exon | 219484 | 219543 |
| exon | 219573 | 220195 |
| CDS | 214724 | 214729 |
| CDS | 215304 | 215475 |
| CDS | 216003 | 216037 |
| CDS | 216816 | 216856 |
| CDS | 217244 | 217618 |
| CDS | 217790 | 217862 |
| CDS | 217955 | 218075 |
| CDS | 218330 | 218417 |
| CDS | 218494 | 218619 |
| CDS | 218726 | 218930 |
| CDS | 219484 | 219543 |
| CDS | 219573 | 219755 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000542 | Glycosaminoglycan_biosynthesis_-_heparan_sulfate_/_heparin Glycosaminoglycan_biosynthesis_-_chondroitin_sulfate_/_dermatan_sulfate protein glycosylation, GARP-G2-like Transcription_Regulator(from iTAK) G2-like Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM000899 | glucose-6-phosphate dehydrogenase activity, glucose metabolic process, galactosyltransferase activity, NADP binding, Glutathione_metabolism Pentose_phosphate_pathway Glycine,_serine_and_threonine_metabolism Phenylalanine,_tyrosine_and_tryptophan_biosynthesis Glycosaminoglycan_biosynthesis_-_chondroitin_sulfate_/_dermatan_sulfate Glycosaminoglycan_biosynthesis_-_heparan_sulfate_/_heparin protein glycosylation, phosphoserine phosphatase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, chorismate mutase activity, chorismate metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13334.5 | DUF4094 | 76 | 112 |
| PF01762.20 | Galactosyl_T | 196 | 373 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate | galactosylxylosylprotein 3-beta-galactosyltransferase [EC:2.4.1.134] | ko00532 | K00734 |
| Glycosaminoglycan biosynthesis - heparan sulfate / heparin | galactosylxylosylprotein 3-beta-galactosyltransferase [EC:2.4.1.134] | ko00534 | K00734 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006486 | protein glycosylation |
| GO:0008378 | galactosyltransferase activity |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.