PH01002414G0090's details annotation
1.Annotation
ICBR annotation: serine/threonine-protein kinase AFC1, putative, expressed
Blast result AT3G53570 : 2.00E-179
Blast annotation: FUS3-complementing gene 1
2.Location
Scaffold: PH01002414
Strand: +
| Region | Start | End |
| gene | 68828 | 73426 |
| mRNA | 68828 | 73426 |
| exon | 68828 | 69862 |
| exon | 70429 | 70468 |
| exon | 71065 | 71091 |
| exon | 71265 | 71418 |
| exon | 71500 | 71548 |
| exon | 71632 | 71746 |
| exon | 72004 | 72095 |
| exon | 72266 | 72422 |
| exon | 72539 | 72603 |
| exon | 72738 | 72835 |
| exon | 72986 | 73091 |
| exon | 73212 | 73426 |
| CDS | 69752 | 69862 |
| CDS | 70429 | 70468 |
| CDS | 71065 | 71091 |
| CDS | 71265 | 71418 |
| CDS | 71500 | 71548 |
| CDS | 71632 | 71746 |
| CDS | 72004 | 72095 |
| CDS | 72266 | 72422 |
| CDS | 72539 | 72603 |
| CDS | 72738 | 72835 |
| CDS | 72986 | 73091 |
| CDS | 73212 | 73364 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000204 | CMGC_CLK (from iTAK) histone deacetylation, ubiquitin ligase complex, histone deacetylase activity, |
| coexpression network | CFinderM000692 | CMGC_CLK (from iTAK) ornithine_metabolic_process histone deacetylation, ornithine carbamoyltransferase activity, carboxyl- or carbamoyltransferase activity, histone deacetylase activity, Arginine_and_proline_metabolism cellular amino acid metabolic process, |
| coexpression network | CFinderM001547 | CMGC_CLK (from iTAK) exosome_(RNase_complex) cell communication, RNA_degradation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 54 | 379 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.