PH01002447G0130's details annotation
1.Annotation
ICBR annotation: PPR repeat domain containing protein, putative, expressed
Blast result AT2G31400 : 0.00E+00
Blast annotation: genomes uncoupled 1
2.Location
Scaffold: PH01002447
Strand: +
| Region | Start | End |
| gene | 95767 | 102989 |
| mRNA | 95767 | 102989 |
| exon | 95767 | 97829 |
| exon | 98279 | 98492 |
| exon | 100558 | 100621 |
| exon | 100664 | 100742 |
| exon | 100905 | 101027 |
| exon | 102216 | 102989 |
| CDS | 95893 | 97829 |
| CDS | 98279 | 98492 |
| CDS | 100558 | 100621 |
| CDS | 100664 | 100742 |
| CDS | 100905 | 101027 |
| CDS | 102216 | 102354 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001163 | CAMK_CDPK (from iTAK) guanyl-nucleotide exchange factor activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13812.5 | PPR_3 | 242 | 286 |
| PF12854.6 | PPR_1 | 304 | 336 |
| PF13041.5 | PPR_2 | 344 | 392 |
| PF13812.5 | PPR_3 | 402 | 442 |
| PF13041.5 | PPR_2 | 448 | 493 |
| PF13041.5 | PPR_2 | 518 | 566 |
| PF13812.5 | PPR_3 | 619 | 645 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.