PH01002450G0290's details annotation
1.Annotation
ICBR annotation: SWIRM domain containing protein, expressed
Blast result AT1G21700 : 3.00E-149
Blast annotation: SWITCH/sucrose nonfermenting 3C
2.Location
Scaffold: PH01002450
Strand: +
| Region | Start | End |
| gene | 199419 | 209621 |
| mRNA | 199419 | 209621 |
| exon | 199419 | 200758 |
| exon | 200825 | 201403 |
| exon | 205381 | 205735 |
| exon | 205852 | 205925 |
| exon | 206718 | 206806 |
| exon | 207003 | 207055 |
| exon | 207151 | 207293 |
| exon | 208396 | 209621 |
| CDS | 200381 | 200758 |
| CDS | 200825 | 201403 |
| CDS | 205381 | 205735 |
| CDS | 205852 | 205925 |
| CDS | 206718 | 206806 |
| CDS | 207003 | 207055 |
| CDS | 207151 | 207293 |
| CDS | 208396 | 208887 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000236 | NAK (from iTAK) STAT Transcription_Regulator(from PlantTFDB) Glycine,_serine_and_threonine_metabolism magnesium_ion_transport TKL-Pl-5 (from iTAK) magnesium_ion_transmembrane_transporter_activity |
| coexpression network | CFinderM000899 | glucose-6-phosphate dehydrogenase activity, glucose metabolic process, galactosyltransferase activity, NADP binding, Glutathione_metabolism Pentose_phosphate_pathway Glycine,_serine_and_threonine_metabolism Phenylalanine,_tyrosine_and_tryptophan_biosynthesis Glycosaminoglycan_biosynthesis_-_chondroitin_sulfate_/_dermatan_sulfate Glycosaminoglycan_biosynthesis_-_heparan_sulfate_/_heparin protein glycosylation, phosphoserine phosphatase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, chorismate mutase activity, chorismate metabolic process, |
| coexpression network | CFinderM001036 | GT10 GlycosylTransferases Various_types_of_N-glycan_biosynthesis Fructose_and_mannose_metabolism Amino_sugar_and_nucleotide_sugar_metabolism protein glycosylation, Protein_processing_in_endoplasmic_reticulum Butirosin_and_neomycin_biosynthesis Streptomycin_biosynthesis calcium ion transport, hexokinase activity, calcium:proton_antiporter_activity UDP-glucose:glycoprotein_glucosyltransferase_activity fucosyltransferase_activity mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, |
| coexpression network | CFinderM001042 | CK1_CK1 (from iTAK) protein transport, Citrate_cycle_(TCA_cycle) Carbon_fixation_pathways_in_prokaryotes Endocytosis |
| coexpression network | CFinderM001078 | actin cytoskeleton, actin_filament_depolymerization actin binding, intracellular, |
| coexpression network | CFinderM001584 | |
| coexpression network | CFinderM001794 | NAK (from iTAK) vacuolar_proton-transporting_V-type_ATPase,_V0_domain proton-transporting V-type ATPase, V0 domain, ATP hydrolysis coupled proton transport, Phagosome Oxidative_phosphorylation hydrogen ion transmembrane transporter activity, calcium ion transport, myosin complex, calcium:proton_antiporter_activity motor activity, cation transmembrane transporter activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04433.16 | SWIRM | 144 | 214 |
| PF00249.30 | Myb_DNA-binding | 359 | 400 |
| PF16495.4 | SWIRM-assoc_1 | 526 | 601 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003682 | chromatin binding |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.