Annotation of co-expression genes

PH01002540G0170's details annotation

1.Annotation

ICBR annotation: RNA recognition motif containing protein, putative, expressed

Blast result AT2G24350 : 8.80E-18
Blast annotation: RNA binding (RRM/RBD/RNP motifs) family protein

2.Location

Scaffold: PH01002540
Strand: -

RegionStartEnd
gene97198100231
mRNA97198100231
exon9719897463
exon9778097867
exon9794998055
exon9827498329
exon9947099667
exon100025100231
CDS9726397463
CDS9778097867
CDS9794998055
CDS9827498329
CDS9947099667
CDS100025100172

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001602SWI/SNF-BAF60b Transcription_Regulator(from iTAK)
histone modification,
C3H Transcription_Regulator(from PlantTFDB)
mRNA_surveillance_pathway
transcription initiation, DNA-dependent,
coexpression networkCFinderM001741protein folding,
Nucleotide_excision_repair
mRNA_surveillance_pathway
Ubiquitin_mediated_proteolysis
peptidyl-prolyl cis-trans isomerase activity,
nucleic acid binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00076.21RRM_1130198

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
mRNA surveillance pathwaypolyadenylate-binding protein 2ko03015K14396

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0003676nucleic acid binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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