PH01002540G0180's details annotation
1.Annotation
ICBR annotation: RNA recognition motif containing protein, putative, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01002540
Strand: -
| Region | Start | End |
| gene | 103258 | 113178 |
| mRNA | 103258 | 113178 |
| exon | 103258 | 103399 |
| exon | 103748 | 103856 |
| exon | 104117 | 104661 |
| exon | 105493 | 105712 |
| exon | 108694 | 108855 |
| exon | 109036 | 109205 |
| exon | 109537 | 109624 |
| exon | 112724 | 113178 |
| CDS | 103386 | 103399 |
| CDS | 103748 | 103856 |
| CDS | 104117 | 104661 |
| CDS | 105493 | 105712 |
| CDS | 108694 | 108855 |
| CDS | 109036 | 109205 |
| CDS | 109537 | 109624 |
| CDS | 112724 | 112906 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001602 | SWI/SNF-BAF60b Transcription_Regulator(from iTAK) histone modification, C3H Transcription_Regulator(from PlantTFDB) mRNA_surveillance_pathway transcription initiation, DNA-dependent, |
| coexpression network | CFinderM001741 | protein folding, Nucleotide_excision_repair mRNA_surveillance_pathway Ubiquitin_mediated_proteolysis peptidyl-prolyl cis-trans isomerase activity, nucleic acid binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.