PH01002587G0010's details annotation
1.Annotation
ICBR annotation: bacterial transferase hexapeptide domain containing protein, expressed
Blast result AT4G18300 : 1.60E-11
Blast annotation: Trimeric LpxA-like enzyme
2.Location
Scaffold: PH01002587
Strand: +
| Region | Start | End |
| gene | 385 | 1380 |
| mRNA | 385 | 1380 |
| exon | 385 | 489 |
| exon | 828 | 944 |
| exon | 1151 | 1380 |
| CDS | 385 | 489 |
| CDS | 828 | 944 |
| CDS | 1151 | 1216 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000453 | carbon fixation, response to wounding, Lysine_degradation SET Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM000715 | proton-transporting two-sector ATPase complex, catalytic domain, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, transferase activity, ubiquitin thiolesterase activity, ATP hydrolysis coupled proton transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00132.23 | Hexapep | 22 | 60 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016740 | transferase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.