PH01002594G0130's details annotation
1.Annotation
ICBR annotation: mitochondrial carrier protein, putative, expressed
Blast result AT4G26180 : 1.00E-102
Blast annotation: Mitochondrial substrate carrier family protein
2.Location
Scaffold: PH01002594
Strand: +
| Region | Start | End |
| gene | 69942 | 74003 |
| mRNA | 69942 | 74003 |
| exon | 69942 | 70092 |
| exon | 71553 | 71638 |
| exon | 71727 | 71934 |
| exon | 72212 | 72338 |
| exon | 72422 | 72606 |
| exon | 72686 | 72808 |
| exon | 73325 | 74003 |
| CDS | 70024 | 70092 |
| CDS | 71553 | 71638 |
| CDS | 71727 | 71934 |
| CDS | 72212 | 72338 |
| CDS | 72422 | 72606 |
| CDS | 72686 | 72808 |
| CDS | 73325 | 73468 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000128 | integral_component_of_peroxisomal_membrane autophagy, peroxisome_fission oligopeptide transport, NAC Transcription_Regulator(from PlantTFDB) RLK-Pelle_LRR-XI-1 (from iTAK) |
| coexpression network | CFinderM000722 | integral_component_of_peroxisomal_membrane GH47 Glycoside_Hydrolases autophagy, peroxisome_fission calcium ion binding, mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, ribonuclease III activity, Protein_processing_in_endoplasmic_reticulum |
| coexpression network | CFinderM001121 | HB-other Transcription_Regulator(from PlantTFDB) transcription_regulatory_region_sequence-specific_DNA_binding HD-ZIP Transcription_Regulator(from PlantTFDB) regulation of transcription, DNA-dependent, NAC Transcription_Regulator(from PlantTFDB) DNA binding, sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity, Rab GTPase activator activity, Glyoxylate_and_dicarboxylate_metabolism Citrate_cycle_(TCA_cycle) Lysine_biosynthesis Carbon_fixation_pathways_in_prokaryotes regulation of Rab GTPase activity, nucleus, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00153.26 | Mito_carr | 32 | 79 |
| PF00153.26 | Mito_carr | 90 | 189 |
| PF00153.26 | Mito_carr | 195 | 285 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.