PH01002603G0080's details annotation
1.Annotation
ICBR annotation: Mpv17 / PMP22 family domain containing protein, expressed
Blast result AT5G19750 : 7.70E-64
Blast annotation: Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein
2.Location
Scaffold: PH01002603
Strand: +
| Region | Start | End |
| gene | 73444 | 76436 |
| mRNA | 73444 | 76436 |
| exon | 73444 | 74624 |
| exon | 74752 | 74839 |
| exon | 75240 | 75334 |
| exon | 75443 | 75515 |
| exon | 75839 | 75925 |
| exon | 76071 | 76436 |
| CDS | 74371 | 74624 |
| CDS | 74752 | 74839 |
| CDS | 75240 | 75334 |
| CDS | 75443 | 75515 |
| CDS | 75839 | 75925 |
| CDS | 76071 | 76151 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000711 | GH35 Glycoside_Hydrolases Jumonji Transcription_Regulator(from iTAK) Valine,_leucine_and_isoleucine_biosynthesis Glycosphingolipid_biosynthesis_-_ganglio_series Other_glycan_degradation Glycosaminoglycan_degradation ketol-acid reductoisomerase activity, coproporphyrinogen oxidase activity, beta-galactosidase activity, Sphingolipid_metabolism Pantothenate_and_CoA_biosynthesis |
| coexpression network | CFinderM001326 | Jumonji Transcription_Regulator(from iTAK) cytoplasm, integral to membrane, coproporphyrinogen oxidase activity, porphyrin-containing compound biosynthetic process, phospholipid transport, Peroxisome Porphyrin_and_chlorophyll_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04117.11 | Mpv17_PMP22 | 188 | 246 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Peroxisome | protein Mpv17 | ko04146 | K13348 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.