Annotation of co-expression genes

PH01002604G0140's details annotation

1.Annotation

ICBR annotation: zinc finger C-x8-C-x5-C-x3-H type family protein, expressed

Blast result AT3G26850 : 7.50E-17
Blast annotation: histone-lysine N-methyltransferases

2.Location

Scaffold: PH01002604
Strand: +

RegionStartEnd
gene6772874133
mRNA6772874133
exon6772868139
exon7034570531
exon7069470899
exon7100671119
exon7126971448
exon7155572984
exon7307174133
CDS6798068139
CDS7034570531
CDS7069470899
CDS7100671119
CDS7126971448
CDS7155572984
CDS7307173100

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000256signal recognition particle,
proton-transporting two-sector ATPase complex, proton-transporting domain,
coexpression networkCFinderM001789proton-transporting V-type ATPase, V0 domain,
proton-transporting two-sector ATPase complex, proton-transporting domain,
C3H Transcription_Regulator(from PlantTFDB)
ATP hydrolysis coupled proton transport,
DNA repair,
nuclease activity,
endonuclease activity,
hydrogen ion transmembrane transporter activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)C3H
Transcription_Regulator(from PlantTFDB)C3H

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00642.23zf-CCCH134155
PF00642.23zf-CCCH232253

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003676nucleic acid binding
GO:0008270zinc ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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