PH01002620G0190's details annotation
1.Annotation
ICBR annotation: respiratory burst oxidase protein B, putative, expressed
Blast result AT1G64060 : 0
Blast annotation: respiratory burst oxidase protein F
2.Location
Scaffold: PH01002620
Strand: -
| Region | Start | End |
| gene | 107565 | 113435 |
| mRNA | 107565 | 113435 |
| exon | 107565 | 108120 |
| exon | 108499 | 108577 |
| exon | 110400 | 110528 |
| exon | 110559 | 110605 |
| exon | 110670 | 110802 |
| exon | 110908 | 111067 |
| exon | 111152 | 111319 |
| exon | 111476 | 111591 |
| exon | 111667 | 111762 |
| exon | 111849 | 112232 |
| exon | 112681 | 113435 |
| CDS | 107891 | 108120 |
| CDS | 108499 | 108577 |
| CDS | 110400 | 110528 |
| CDS | 110559 | 110605 |
| CDS | 110670 | 110802 |
| CDS | 110908 | 111067 |
| CDS | 111152 | 111319 |
| CDS | 111476 | 111591 |
| CDS | 111667 | 111762 |
| CDS | 111849 | 112232 |
| CDS | 112681 | 113061 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000589 | TKL-Pl-1 (from iTAK) TKL-Pl-6 (from iTAK) Fructose_and_mannose_metabolism 6-phosphofructokinase complex, diphosphate-fructose-6-phosphate 1-phosphotransferase activity, cysteine-type endopeptidase activity, 6-phosphofructokinase activity, protein kinase activity, ATP binding, transferase activity, transferring phosphorus-containing groups, protein phosphorylation, fructose_6-phosphate_metabolic_process RLK-Pelle_RLCK-VIIa-2 (from iTAK) |
| coexpression network | CFinderM000816 | CMGC_CDK-CRK7-CDK9 (from iTAK) |
| coexpression network | CFinderM000925 | Ribosome translation, fructose_6-phosphate_metabolic_process Fructose_and_mannose_metabolism GARP-G2-like Transcription_Regulator(from iTAK) G2-like Transcription_Regulator(from PlantTFDB) diphosphate-fructose-6-phosphate 1-phosphotransferase activity, structural constituent of ribosome, large ribosomal subunit, 6-phosphofructokinase complex, 6-phosphofructokinase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01794.18 | Ferric_reduct | 84 | 239 |
| PF08022.11 | FAD_binding_8 | 281 | 395 |
| PF08030.11 | NAD_binding_6 | 402 | 582 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016020 | membrane |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.