PH01002633G0080's details annotation
1.Annotation
ICBR annotation: beta-D-xylosidase, putative, expressed
Blast result AT1G78060 : 5.00E-137
Blast annotation: Glycosyl hydrolase family protein
2.Location
Scaffold: PH01002633
Strand: -
| Region | Start | End |
| gene | 52459 | 58195 |
| mRNA | 52459 | 58195 |
| exon | 52459 | 52763 |
| exon | 53025 | 53122 |
| exon | 53254 | 53423 |
| exon | 53586 | 53867 |
| exon | 54167 | 54217 |
| exon | 55682 | 58195 |
| CDS | 52459 | 52763 |
| CDS | 53025 | 53122 |
| CDS | 53254 | 53423 |
| CDS | 53586 | 53867 |
| CDS | 54167 | 54217 |
| CDS | 55682 | 56086 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000013 | cellulose biosynthetic process, cellulose synthase (UDP-forming) activity, response to oxidative stress, extracellular polysaccharide biosynthetic process, hydrolase activity, hydrolyzing O-glycosyl compounds, carbohydrate metabolic process, |
| coexpression network | CFinderM000528 | RLK-Pelle_RLCK-XIII (from iTAK) base-excision repair, Base_excision_repair DNA-3-methyladenine glycosylase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00933.20 | Glyco_hydro_3 | 171 | 370 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.