PH01002667G0160's details annotation
1.Annotation
ICBR annotation: peptide transporter PTR2, putative, expressed
Blast result AT2G02040 : 1.00E-134
Blast annotation: peptide transporter 2
2.Location
Scaffold: PH01002667
Strand: +
| Region | Start | End |
| gene | 130933 | 135916 |
| mRNA | 130933 | 135916 |
| exon | 130933 | 131299 |
| exon | 132612 | 132675 |
| exon | 132828 | 133045 |
| exon | 133162 | 133703 |
| exon | 134332 | 134584 |
| exon | 134618 | 135916 |
| CDS | 131243 | 131299 |
| CDS | 132612 | 132675 |
| CDS | 132828 | 133045 |
| CDS | 133162 | 133703 |
| CDS | 134332 | 134584 |
| CDS | 134618 | 135133 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001877 | HD-ZIP Transcription_Regulator(from PlantTFDB) HB-BELL Transcription_Regulator(from iTAK) HB-HD-ZIP Transcription_Regulator(from iTAK) TALE Transcription_Regulator(from PlantTFDB) membrane, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00854.20 | PTR2 | 101 | 506 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005215 | transporter activity |
| GO:0006810 | transport |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.