Annotation of co-expression genes

PH01002688G0170's details annotation

1.Annotation

ICBR annotation: KH domain-containing protein, putative, expressed

Blast result AT4G10070 : 2.20E-45
Blast annotation: KH domain-containing protein

2.Location

Scaffold: PH01002688
Strand: -

RegionStartEnd
gene120312128891
mRNA120312128891
exon120312122709
exon123235123307
exon123605123744
exon127286127402
exon127495127566
exon127631127726
exon127842128027
exon128228128466
exon128641128891
CDS121561122709
CDS123235123307
CDS123605123744
CDS127286127402
CDS127495127566
CDS127631127726
CDS127842128027
CDS128228128466
CDS128641128869

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000681protein arginylation,
GH47 Glycoside_Hydrolases
arginyltransferase activity,
mannosyl-oligosaccharide 1,2-alpha-mannosidase activity,
Various_types_of_N-glycan_biosynthesis
N-Glycan_biosynthesis
coexpression networkCFinderM000934protein import into nucleus,
nucleobase-containing compound metabolic process,
bZIP Transcription_Regulator(from PlantTFDB)
RNA binding,
coexpression networkCFinderM000937

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00013.28KH_1148213
PF00013.28KH_1242308

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003723RNA binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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