PH01002736G0180's details annotation
1.Annotation
ICBR annotation: DNA repair protein Rad51, putative, expressed
Blast result AT5G20850 : 2.00E-129
Blast annotation: RAS associated with diabetes protein 51
2.Location
Scaffold: PH01002736
Strand: +
| Region | Start | End |
| gene | 135361 | 140449 |
| mRNA | 135361 | 140449 |
| exon | 135361 | 135576 |
| exon | 136804 | 136952 |
| exon | 137067 | 137197 |
| exon | 137244 | 137335 |
| exon | 137437 | 137531 |
| exon | 138294 | 138423 |
| exon | 138650 | 138771 |
| exon | 138866 | 140449 |
| CDS | 135493 | 135576 |
| CDS | 136804 | 136952 |
| CDS | 137067 | 137197 |
| CDS | 137244 | 137335 |
| CDS | 137437 | 137531 |
| CDS | 138294 | 138423 |
| CDS | 138650 | 138771 |
| CDS | 138866 | 138989 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000299 | nucleus, B3-ARF Transcription_Regulator(from iTAK) RLK-Pelle_Extensin (from iTAK) ARF Transcription_Regulator(from PlantTFDB) GRF Transcription_Regulator(from PlantTFDB) AGC_RSK-2 (from iTAK) regulation of transcription, DNA-dependent, Nucleotide_excision_repair DNA_replication Mismatch_repair Homologous_recombination regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity response to hormone stimulus, DNA metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08423.10 | Rad51 | 183 | 305 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Homologous recombination | DNA repair protein RAD51 | ko03440 | K04482 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0003677 | DNA binding |
| GO:0003684 | damaged DNA binding |
| GO:0005524 | ATP binding |
| GO:0006259 | DNA metabolic process |
| GO:0006281 | DNA repair |
| GO:0008094 | DNA-dependent ATPase activity |
| GO:0017111 | nucleoside-triphosphatase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.