PH01002828G0270's details annotation
1.Annotation
ICBR annotation: SEC14 cytosolic factor family protein, putative, expressed
Blast result AT1G75170 : 7.40E-73
Blast annotation: Sec14p-like phosphatidylinositol transfer family protein
2.Location
Scaffold: PH01002828
Strand: +
| Region | Start | End |
| gene | 150565 | 152430 |
| mRNA | 150565 | 152430 |
| exon | 150565 | 151300 |
| exon | 151634 | 151879 |
| exon | 152029 | 152430 |
| CDS | 151052 | 151300 |
| CDS | 151634 | 151879 |
| CDS | 152029 | 152337 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000475 | TKL-Pl-6 (from iTAK) carbohydrate phosphorylation, RLK-Pelle_RLCK-VIIa-2 (from iTAK) galactokinase activity, diphosphate-fructose-6-phosphate 1-phosphotransferase activity, fructose_6-phosphate_metabolic_process galactose metabolic process, Fructose_and_mannose_metabolism Galactose_metabolism ATP binding, 6-phosphofructokinase activity, kinase activity, |
| coexpression network | CFinderM000589 | TKL-Pl-1 (from iTAK) TKL-Pl-6 (from iTAK) Fructose_and_mannose_metabolism 6-phosphofructokinase complex, diphosphate-fructose-6-phosphate 1-phosphotransferase activity, cysteine-type endopeptidase activity, 6-phosphofructokinase activity, protein kinase activity, ATP binding, transferase activity, transferring phosphorus-containing groups, protein phosphorylation, fructose_6-phosphate_metabolic_process RLK-Pelle_RLCK-VIIa-2 (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00650.19 | CRAL_TRIO | 84 | 208 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.