PH01002850G0200's details annotation
1.Annotation
ICBR annotation: Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
Blast result AT1G52740 : 6.40E-54
Blast annotation: histone H2A protein 9
2.Location
Scaffold: PH01002850
Strand: -
| Region | Start | End |
| gene | 137931 | 140992 |
| mRNA | 137931 | 140992 |
| exon | 137931 | 139204 |
| exon | 140580 | 140992 |
| CDS | 138908 | 139204 |
| CDS | 140580 | 140696 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000074 | Ribosome translation, structural constituent of ribosome, intracellular, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00125.23 | Histone | 13 | 106 |
| PF16211.4 | Histone_H2A_C | 107 | 136 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000786 | nucleosome |
| GO:0003677 | DNA binding |
| GO:0005634 | nucleus |
| GO:0006334 | nucleosome assembly |
| GO:0046982 | protein heterodimerization activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.