PH01003003G0230's details annotation
1.Annotation
ICBR annotation: membrane associated DUF588 domain containing protein, putative, expressed
Blast result AT4G16442 : 3.70E-46
Blast annotation: Uncharacterised protein family (UPF0497)
2.Location
Scaffold: PH01003003
Strand: -
| Region | Start | End |
| gene | 147096 | 151117 |
| mRNA | 147096 | 151117 |
| exon | 147096 | 147576 |
| exon | 148193 | 148287 |
| exon | 149176 | 149312 |
| exon | 150770 | 151117 |
| CDS | 147337 | 147576 |
| CDS | 148193 | 148287 |
| CDS | 149176 | 149312 |
| CDS | 150770 | 151014 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001725 | cellular protein metabolic process, MYB Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04535.11 | DUF588 | 33 | 181 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.