Annotation of co-expression genes

PH01003021G0200's details annotation

1.Annotation

ICBR annotation: tRNA synthetase class I family protein, putative

Blast result AT3G56300 : 3.80E-76
Blast annotation: Cysteinyl-tRNA synthetase, class Ia family protein

2.Location

Scaffold: PH01003021
Strand: -

RegionStartEnd
gene138478145385
mRNA138478145385
exon138478140334
exon140476140658
exon140776140979
exon141985142064
exon142305142410
exon142833143003
exon143372143533
exon144054144117
exon144797145385
CDS140113140334
CDS140476140658
CDS140776140979
CDS141985142064
CDS142305142410
CDS142833143003
CDS143372143533
CDS144054144117
CDS144797144999

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000008TKL-Pl-4 (from iTAK)
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
transferase activity, transferring phosphorus-containing groups,
protein phosphorylation,
Spliceosome
protein kinase activity,
ATP binding,
protein serine/threonine kinase activity,
exocyst,
chloroplast,
coexpression networkCFinderM000101RLK-Pelle_RLCK-VIIa-2 (from iTAK)
response to heat,
coexpression networkCFinderM000418tRNA aminoacylation for protein translation,
coexpression networkCFinderM000761tRNA aminoacylation for protein translation,
coexpression networkCFinderM000835phenylalanyl-tRNA aminoacylation,
aminoacyl-tRNA ligase activity,
phenylalanine-tRNA ligase activity,
tRNA binding,
tRNA aminoacylation,
Aminoacyl-tRNA_biosynthesis
nucleotide binding,
magnesium ion binding,
cytoplasm,
GeBP Transcription_Regulator(from PlantTFDB)
RNA binding,
tRNA aminoacylation for protein translation,
ATP binding,
coexpression networkCFinderM000933TKL-Pl-4 (from iTAK)
Others Transcription_Regulator(from iTAK)
response to heat,
Protein_processing_in_endoplasmic_reticulum
coexpression networkCFinderM000935tRNA aminoacylation for protein translation,
Spliceosome
coexpression networkCFinderM001099HSF Transcription_Regulator(from PlantTFDB)
cellular process,
coexpression networkCFinderM001290Protein_processing_in_endoplasmic_reticulum
AGC_NDR (from iTAK)
coexpression networkCFinderM001485HSF Transcription_Regulator(from PlantTFDB)
myosin complex,
tRNA aminoacylation for protein translation,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01406.18tRNA-synt_1e31201

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0004812aminoacyl-tRNA ligase activity
GO:0005524ATP binding
GO:0006418tRNA aminoacylation for protein translation

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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