PH01003037G0070's details annotation
1.Annotation
ICBR annotation: F-box domain containing protein, expressed
Blast result AT3G07550 : 6.80E-86
Blast annotation: RNI-like superfamily protein
2.Location
Scaffold: PH01003037
Strand: +
| Region | Start | End |
| gene | 42978 | 45390 |
| mRNA | 42978 | 45390 |
| exon | 42978 | 45390 |
| CDS | 43783 | 44928 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001105 | Endocytosis pseudouridine synthesis, RNA modification, regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity protein_kinase_binding pseudouridine synthase activity, |
| coexpression network | CFinderM001106 | Endocytosis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13516.5 | LRR_6 | 255 | 276 |
| PF13516.5 | LRR_6 | 304 | 327 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.