Annotation of co-expression genes

PH01003051G0100's details annotation

1.Annotation

ICBR annotation: phospholipid-transporting ATPase, putative, expressed

Blast result AT1G68710 : 0.00E+00
Blast annotation: ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein

2.Location

Scaffold: PH01003051
Strand: -

RegionStartEnd
gene8555693504
mRNA8555693504
exon8555686830
exon8731587506
exon8760987707
exon8780487926
exon8803788249
exon8847388581
exon8870188789
exon8887989155
exon8925889368
exon8944490789
exon9172593504
CDS8618386830
CDS8731587506
CDS8760987707
CDS8780487926
CDS8803788249
CDS8847388581
CDS8870188789
CDS8887989155
CDS8925889368
CDS8944490789
CDS9172592126

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000721phospholipid transport,
phospholipid-translocating ATPase activity,
Glycine,_serine_and_threonine_metabolism
cation transport,
cation-transporting_ATPase_activity
magnesium ion binding,
phosphoserine phosphatase activity,
CAMK_CDPK (from iTAK)
integral to membrane,
L-serine biosynthetic process,
metal ion binding,
Methane_metabolism

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF16209.4PhoLip_ATPase_N43108
PF00122.19E1-E2_ATPase138386
PF13246.5Cation_ATPase524625
PF16212.4PhoLip_ATPase_C8921142

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0000287magnesium ion binding
GO:0004012phospholipid-translocating ATPase activity
GO:0005524ATP binding
GO:0006812cation transport
GO:0015914phospholipid transport
GO:0016021integral to membrane
GO:0019829cation-transporting ATPase activity
GO:0046872metal ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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