Annotation of co-expression genes

PH01003089G0010's details annotation

1.Annotation

ICBR annotation: cytochrome P450, putative, expressed

Blast result AT5G25900 : 3.50E-29
Blast annotation: GA requiring 3

2.Location

Scaffold: PH01003089
Strand: +

RegionStartEnd
gene605713849
mRNA605713849
exon60576546
exon85308662
exon97899949
exon1001510041
exon1201112294
exon1284513849
CDS63886546
CDS85308662
CDS97899949
CDS1001510041
CDS1201112294
CDS1284512977

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000323Diterpenoid_biosynthesis
Lysine_degradation
SET Transcription_Regulator(from iTAK)
histone_methylation
electron carrier activity,
heme binding,
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen,
iron ion binding,
histone_lysine_methylation
histone_binding
histone-lysine N-methyltransferase activity,
oxidation-reduction process,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00067.21p450101153
PF00067.21p450161242

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005506iron ion binding
GO:0009055electron carrier activity
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037heme binding
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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