Annotation of co-expression genes

PH01003093G0170's details annotation

1.Annotation

ICBR annotation: pantothenate kinase, putative, expressed

Blast result AT4G32180 : 0.00E+00
Blast annotation: pantothenate kinase 2

2.Location

Scaffold: PH01003093
Strand: +

RegionStartEnd
gene108221114871
mRNA108221114871
exon108221109160
exon109734109946
exon110520110575
exon111037111153
exon111348111467
exon111528111601
exon111703111796
exon112016112147
exon114088114200
exon114353114871
CDS108902109160
CDS109734109946
CDS110520110575
CDS111037111153
CDS111348111467
CDS111528111601
CDS111703111796
CDS112016112147
CDS114088114200
CDS114353114623

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000347Pantothenate_and_CoA_biosynthesis
Valine,_leucine_and_isoleucine_degradation
CMGC_CDK-CRK7-CDK9 (from iTAK)
pantothenate kinase activity,
coenzyme A biosynthetic process,
Propanoate_metabolism
beta-Alanine_metabolism

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03630.13Fumble80416

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Pantothenate and CoA biosynthesistype II pantothenate kinase [EC:2.7.1.33]ko00770K09680

10.Gene Ontology

GO AccessionGO Annotation
GO:0004594pantothenate kinase activity
GO:0005524ATP binding
GO:0015937coenzyme A biosynthetic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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