PH01003328G0010's details annotation
1.Annotation
ICBR annotation: 60S ribosomal protein L23A, putative, expressed
Blast result AT2G39460 : 7.40E-55
Blast annotation: ribosomal protein L23AA
2.Location
Scaffold: PH01003328
Strand: +
| Region | Start | End |
| gene | 1214 | 4230 |
| mRNA | 1214 | 4230 |
| exon | 1214 | 1306 |
| exon | 2468 | 2826 |
| exon | 2911 | 4230 |
| CDS | 1295 | 1306 |
| CDS | 2468 | 2826 |
| CDS | 2911 | 2995 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001635 | Ribosome translation, Ribosome intracellular, C3H Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03939.12 | Ribosomal_L23eN | 13 | 61 |
| PF00276.19 | Ribosomal_L23 | 71 | 132 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | large subunit ribosomal protein L23Ae | ko03011 | K02893 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.