PH01003331G0020's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G48090 : 0.00E+00
Blast annotation: calcium-dependent lipid-binding family protein
2.Location
Scaffold: PH01003331
Strand: -
| Region | Start | End |
| gene | 15525 | 57741 |
| mRNA | 15525 | 57741 |
| exon | 15525 | 15867 |
| exon | 16194 | 16475 |
| exon | 16550 | 16708 |
| exon | 16799 | 17155 |
| exon | 17264 | 17485 |
| exon | 17639 | 17765 |
| exon | 17844 | 17986 |
| exon | 18255 | 18432 |
| exon | 18528 | 19061 |
| exon | 19140 | 19324 |
| exon | 19392 | 19565 |
| exon | 21124 | 21210 |
| exon | 21301 | 21766 |
| exon | 21833 | 21874 |
| exon | 23275 | 23351 |
| exon | 23934 | 24749 |
| exon | 24909 | 25418 |
| exon | 25545 | 25675 |
| exon | 27181 | 27235 |
| exon | 27546 | 27746 |
| exon | 27828 | 28127 |
| exon | 28740 | 28898 |
| exon | 28979 | 29297 |
| exon | 29380 | 29766 |
| exon | 29938 | 30246 |
| exon | 32188 | 32272 |
| exon | 32444 | 32739 |
| exon | 32852 | 32955 |
| exon | 33694 | 33816 |
| exon | 35106 | 35318 |
| exon | 35468 | 36085 |
| exon | 36281 | 36556 |
| exon | 37556 | 37655 |
| exon | 38346 | 38475 |
| exon | 38869 | 38962 |
| exon | 39094 | 39151 |
| exon | 40266 | 40478 |
| exon | 40568 | 40848 |
| exon | 42052 | 42109 |
| exon | 42278 | 42343 |
| exon | 42456 | 42520 |
| exon | 44275 | 44418 |
| exon | 44516 | 44624 |
| exon | 44996 | 45180 |
| exon | 45257 | 45370 |
| exon | 48072 | 48203 |
| exon | 48545 | 48865 |
| exon | 49121 | 49588 |
| exon | 50294 | 50359 |
| exon | 50522 | 50662 |
| exon | 51232 | 51328 |
| exon | 51833 | 51933 |
| exon | 52034 | 52305 |
| exon | 55234 | 55306 |
| exon | 55714 | 55869 |
| exon | 56153 | 56365 |
| exon | 56440 | 56560 |
| exon | 56916 | 56983 |
| exon | 57112 | 57207 |
| exon | 57239 | 57309 |
| exon | 57620 | 57741 |
| CDS | 15784 | 15867 |
| CDS | 16194 | 16475 |
| CDS | 16550 | 16708 |
| CDS | 16799 | 17155 |
| CDS | 17264 | 17485 |
| CDS | 17639 | 17765 |
| CDS | 17844 | 17986 |
| CDS | 18255 | 18432 |
| CDS | 18528 | 19061 |
| CDS | 19140 | 19324 |
| CDS | 19392 | 19565 |
| CDS | 21124 | 21210 |
| CDS | 21301 | 21766 |
| CDS | 21833 | 21874 |
| CDS | 23275 | 23351 |
| CDS | 23934 | 24749 |
| CDS | 24909 | 25418 |
| CDS | 25545 | 25675 |
| CDS | 27181 | 27235 |
| CDS | 27546 | 27746 |
| CDS | 27828 | 28127 |
| CDS | 28740 | 28898 |
| CDS | 28979 | 29297 |
| CDS | 29380 | 29766 |
| CDS | 29938 | 30246 |
| CDS | 32188 | 32272 |
| CDS | 32444 | 32739 |
| CDS | 32852 | 32955 |
| CDS | 33694 | 33816 |
| CDS | 35106 | 35318 |
| CDS | 35468 | 36085 |
| CDS | 36281 | 36556 |
| CDS | 37556 | 37655 |
| CDS | 38346 | 38475 |
| CDS | 38869 | 38962 |
| CDS | 39094 | 39151 |
| CDS | 40266 | 40478 |
| CDS | 40568 | 40848 |
| CDS | 42052 | 42109 |
| CDS | 42278 | 42343 |
| CDS | 42456 | 42520 |
| CDS | 44275 | 44418 |
| CDS | 44516 | 44624 |
| CDS | 44996 | 45180 |
| CDS | 45257 | 45370 |
| CDS | 48072 | 48203 |
| CDS | 48545 | 48865 |
| CDS | 49121 | 49588 |
| CDS | 50294 | 50359 |
| CDS | 50522 | 50662 |
| CDS | 51232 | 51328 |
| CDS | 51833 | 51933 |
| CDS | 52034 | 52305 |
| CDS | 55234 | 55306 |
| CDS | 55714 | 55869 |
| CDS | 56153 | 56365 |
| CDS | 56440 | 56560 |
| CDS | 56916 | 56983 |
| CDS | 57112 | 57207 |
| CDS | 57239 | 57309 |
| CDS | 57620 | 57641 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000068 | cellular protein modification process, ubiquitin-protein ligase activity, Ubiquitin_mediated_proteolysis binding, intracellular, protein binding, CE8 Carbohydrate_Esterases GH28 Glycoside_Hydrolases Alfin-like Transcription_Regulator(from iTAK) SWI/SNF-SWI3 Transcription_Regulator(from iTAK) TORC1_complex |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF16910.4 | VPS13_mid_rpt | 36 | 208 |
| PF14223.5 | Retrotran_gag_2 | 1055 | 1136 |
| PF06101.10 | Vps62 | 1861 | 2030 |
| PF06101.10 | Vps62 | 2167 | 2252 |
| PF00168.29 | C2 | 2402 | 2506 |
| PF06650.11 | SHR-BD | 3041 | 3359 |
| PF16909.4 | VPS13_C | 3609 | 3756 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.