PH01003332G0190's details annotation
1.Annotation
ICBR annotation: histone deacetylase complex subunit SAP18, putative, expressed
Blast result AT2G45640 : 4.80E-37
Blast annotation: SIN3 associated polypeptide P18
2.Location
Scaffold: PH01003332
Strand: -
| Region | Start | End |
| gene | 116875 | 120629 |
| mRNA | 116875 | 120629 |
| exon | 116875 | 117252 |
| exon | 117336 | 117407 |
| exon | 118057 | 118152 |
| exon | 118374 | 118484 |
| exon | 119879 | 120629 |
| CDS | 117220 | 117252 |
| CDS | 117336 | 117407 |
| CDS | 118057 | 118152 |
| CDS | 118374 | 118484 |
| CDS | 119879 | 120127 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000262 | Ribosome translation, structural constituent of ribosome, proton-transporting ATP synthase complex assembly, intracellular, signal peptidase complex, signal peptide processing, mRNA processing, Ribosome peptidase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06487.11 | SAP18 | 84 | 185 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| RNA transport | histone deacetylase complex subunit SAP18 | ko03013 | K14324 |
| mRNA surveillance pathway | histone deacetylase complex subunit SAP18 | ko03015 | K14324 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.