PH01003339G0160's details annotation
1.Annotation
ICBR annotation: ariadne-1, putative, expressed
Blast result AT3G27710 : 4.00E-143
Blast annotation: RING/U-box superfamily protein
2.Location
Scaffold: PH01003339
Strand: +
| Region | Start | End |
| gene | 96984 | 105341 |
| mRNA | 96984 | 105341 |
| exon | 96984 | 98500 |
| exon | 98645 | 98677 |
| exon | 98782 | 99067 |
| exon | 100624 | 101104 |
| exon | 101972 | 102059 |
| exon | 102349 | 102440 |
| exon | 102906 | 103454 |
| exon | 103524 | 103623 |
| exon | 104164 | 104251 |
| exon | 104604 | 105341 |
| CDS | 98282 | 98500 |
| CDS | 98645 | 98677 |
| CDS | 98782 | 99067 |
| CDS | 100624 | 101104 |
| CDS | 101972 | 102059 |
| CDS | 102349 | 102440 |
| CDS | 102906 | 103454 |
| CDS | 103524 | 103623 |
| CDS | 104164 | 104251 |
| CDS | 104604 | 104758 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001276 | GT8 GlycosylTransferases plant-type cell wall organization, extracellular region, |
| coexpression network | CFinderM001304 | nucleoside-triphosphatase activity, ATPase activity, coupled to transmembrane movement of substances, GT47 GlycosylTransferases RLK-Pelle_CR4L (from iTAK) ABC_transporters ATPase activity, ATP binding, nucleotide binding, SNF2 Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01485.20 | IBR | 226 | 288 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.