PH01003373G0060's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G58100 : 3.70E-57
Blast annotation: -
2.Location
Scaffold: PH01003373
Strand: +
| Region | Start | End |
| gene | 29192 | 38133 |
| mRNA | 29192 | 38133 |
| exon | 29192 | 30583 |
| exon | 31008 | 31183 |
| exon | 31990 | 32179 |
| exon | 33327 | 33426 |
| exon | 36892 | 36968 |
| exon | 37339 | 38133 |
| CDS | 30438 | 30583 |
| CDS | 31008 | 31183 |
| CDS | 31990 | 32179 |
| CDS | 33327 | 33426 |
| CDS | 36892 | 36968 |
| CDS | 37339 | 37510 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000008 | TKL-Pl-4 (from iTAK) RLK-Pelle_RLCK-VIIa-2 (from iTAK) transferase activity, transferring phosphorus-containing groups, protein phosphorylation, Spliceosome protein kinase activity, ATP binding, protein serine/threonine kinase activity, exocyst, chloroplast, |
| coexpression network | CFinderM000131 | GT13 GlycosylTransferases vacuolar_proton-transporting_V-type_ATPase,_V0_domain Golgi membrane, proton-transporting V-type ATPase, V0 domain, |
| coexpression network | CFinderM000418 | tRNA aminoacylation for protein translation, |
| coexpression network | CFinderM000999 | exocytosis, SBP Transcription_Regulator(from PlantTFDB) exocyst, Protein_processing_in_endoplasmic_reticulum |
| coexpression network | CFinderM001728 | NAK (from iTAK) vacuolar_proton-transporting_V-type_ATPase,_V0_domain proton-transporting V-type ATPase, V0 domain, exocyst, ATP hydrolysis coupled proton transport, exocytosis, Oxidative_phosphorylation Phagosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.