PH01003395G0080's details annotation
1.Annotation
ICBR annotation: zinc finger family protein, putative, expressed
Blast result AT1G30240 : 1.20E-18
Blast annotation: -
2.Location
Scaffold: PH01003395
Strand: +
| Region | Start | End |
| gene | 42763 | 54213 |
| mRNA | 42763 | 54213 |
| exon | 42763 | 43998 |
| exon | 44057 | 44646 |
| exon | 45007 | 45050 |
| exon | 45636 | 45753 |
| exon | 47537 | 47596 |
| exon | 48244 | 48428 |
| exon | 48671 | 48845 |
| exon | 50839 | 50898 |
| exon | 51063 | 51192 |
| exon | 52957 | 53176 |
| exon | 53221 | 54213 |
| CDS | 43581 | 43998 |
| CDS | 44057 | 44646 |
| CDS | 45007 | 45050 |
| CDS | 45636 | 45753 |
| CDS | 47537 | 47596 |
| CDS | 48244 | 48428 |
| CDS | 48671 | 48845 |
| CDS | 50839 | 50898 |
| CDS | 51063 | 51192 |
| CDS | 52957 | 53176 |
| CDS | 53221 | 53758 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000314 | 6-phosphofructokinase complex, heme biosynthetic process, ferrochelatase activity, RLK-Pelle_DLSV (from iTAK) |
| coexpression network | CFinderM000781 | spliceosomal complex, GPI anchor metabolic process, mitosis, Spliceosome |
| coexpression network | CFinderM001176 | 6-phosphofructokinase complex, amino acid binding, 6-phosphofructokinase activity, glycolysis, |
| coexpression network | CFinderM001177 | MED6 Transcription_Regulator(from iTAK) mediator complex, regulation of transcription from RNA polymerase II promoter, metabolic process, Ether_lipid_metabolism Glycerophospholipid_metabolism Endocytosis |
| coexpression network | CFinderM001559 | GT22 GlycosylTransferases intrinsic to endoplasmic reticulum membrane, GPI anchor metabolic process, GPI anchor biosynthetic process, N-Glycan_biosynthesis Various_types_of_N-glycan_biosynthesis |
| coexpression network | CFinderM001732 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.