PH01003418G0140's details annotation
1.Annotation
ICBR annotation: armadillo/beta-catenin repeat family protein, putative, expressed
Blast result AT4G05440 : 1.10E-41
Blast annotation: temperature sensing protein-related
2.Location
Scaffold: PH01003418
Strand: +
| Region | Start | End |
| gene | 141732 | 145884 |
| mRNA | 141732 | 145884 |
| exon | 141732 | 143782 |
| exon | 143942 | 145884 |
| CDS | 143714 | 143782 |
| CDS | 143942 | 145192 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000035 | ubiquitin-dependent protein catabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07065.13 | D123 | 78 | 168 |
| PF07065.13 | D123 | 267 | 411 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.