Annotation of co-expression genes

PH01003429G0150's details annotation

1.Annotation

ICBR annotation: thioredoxin, putative, expressed

Blast result - : -
Blast annotation: -

2.Location

Scaffold: PH01003429
Strand: +

RegionStartEnd
gene103494105260
mRNA103494105260
exon103494104114
exon104799105260
CDS103965104114
CDS104799105008

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001342
coexpression networkCFinderM001541Terpenoid_backbone_biosynthesis
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity,
1,3-beta-D-glucan synthase complex,
(1->3)-beta-D-glucan biosynthetic process,
terpenoid biosynthetic process,
iron-sulfur cluster assembly,
coexpression networkCFinderM001654WNK_NRBP (from iTAK)
RNA_transport

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00085.19Thioredoxin77115

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0006662glycerol ether metabolic process
GO:0009055electron carrier activity
GO:0015035protein disulfide oxidoreductase activity
GO:0045454cell redox homeostasis

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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