Annotation of co-expression genes

PH01003486G0160's details annotation

1.Annotation

ICBR annotation: potassium channel KAT1, putative, expressed

Blast result AT4G18290 : 4.00E-168
Blast annotation: potassium channel in Arabidopsis thaliana 2

2.Location

Scaffold: PH01003486
Strand: -

RegionStartEnd
gene6717973376
mRNA6717973376
exon6717967472
exon6901169620
exon6972069905
exon6999770029
exon7013570233
exon7032570564
exon7153071847
exon7197872035
exon7237772592
exon7269373376
CDS6736067472
CDS6901169620
CDS6972069905
CDS6999770029
CDS7013570233
CDS7032570564
CDS7153071847
CDS7197872035
CDS7237772592
CDS7269372862

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000646ion transport,
Ubiquitin_mediated_proteolysis
membrane,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00520.30Ion_trans129251
PF00027.28cNMP_binding342427
PF11834.7KHA608677

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005216ion channel activity
GO:0006811ion transport
GO:0016020membrane
GO:0055085transmembrane transport

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.