PH01003506G0010's details annotation
1.Annotation
ICBR annotation: mitochondrial transcription termination factor family protein, putative, expressed
Blast result AT2G44020 : 2.00E-110
Blast annotation: Mitochondrial transcription termination factor family protein
2.Location
Scaffold: PH01003506
Strand: +
| Region | Start | End |
| gene | 3453 | 6215 |
| mRNA | 3453 | 6215 |
| exon | 3453 | 6215 |
| CDS | 5317 | 6135 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000764 | RNA-dependent DNA replication, RNA-directed DNA polymerase activity, protein import into mitochondrial outer membrane, vacuolar transport, mitochondrial outer membrane translocase complex, retromer complex, cell communication, mTERF Transcription_Regulator(from iTAK) myosin complex, phosphoric ester hydrolase activity, phosphatidylinositol binding, motor activity, RNA binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | mTERF |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02536.13 | mTERF | 1 | 221 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.