Annotation of co-expression genes

PH01003506G0060's details annotation

1.Annotation

ICBR annotation: pectinesterase, putative, expressed

Blast result AT2G43050 : 1.00E-119
Blast annotation: Plant invertase/pectin methylesterase inhibitor superfamily

2.Location

Scaffold: PH01003506
Strand: +

RegionStartEnd
gene2688930087
mRNA2688930087
exon2688928009
exon2928230087
CDS2700728009
CDS2928229961

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000074Ribosome
translation,
structural constituent of ribosome,
intracellular,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Carbohydrate_EsterasesCE8

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF04043.14PMEI54195
PF01095.18Pectinesterase243546

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004857enzyme inhibitor activity
GO:0005618cell wall
GO:0030599pectinesterase activity
GO:0042545cell wall modification

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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