PH01003544G0090's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G11560 : 0.00E+00
Blast annotation: catalytics
2.Location
Scaffold: PH01003544
Strand: +
| Region | Start | End |
| gene | 33118 | 41421 |
| mRNA | 33118 | 41421 |
| exon | 33118 | 33609 |
| exon | 33690 | 34497 |
| exon | 34858 | 35589 |
| exon | 35670 | 35891 |
| exon | 36179 | 36274 |
| exon | 36367 | 36561 |
| exon | 37662 | 37775 |
| exon | 38777 | 39033 |
| exon | 40473 | 40588 |
| exon | 41225 | 41421 |
| CDS | 33473 | 33609 |
| CDS | 33690 | 34497 |
| CDS | 34858 | 35589 |
| CDS | 35670 | 35891 |
| CDS | 36179 | 36274 |
| CDS | 36367 | 36561 |
| CDS | 37662 | 37775 |
| CDS | 38777 | 39033 |
| CDS | 40473 | 40588 |
| CDS | 41225 | 41271 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000330 | GT96 GlycosylTransferases ER_membrane_protein_complex |
| coexpression network | CFinderM000520 | ER_membrane_protein_complex GT96 GlycosylTransferases TKL-Pl-4 (from iTAK) |
| coexpression network | CFinderM001860 | Various_types_of_N-glycan_biosynthesis N-Glycan_biosynthesis Protein_processing_in_endoplasmic_reticulum dolichyl-diphosphooligosaccharide-protein glycotransferase activity, GT66 GlycosylTransferases protein glycosylation, protein N-linked glycosylation via asparagine, phenylalanyl-tRNA aminoacylation, tRNA aminoacylation, phenylalanine-tRNA ligase activity, oligosaccharyl transferase activity, tRNA binding, ER_membrane_protein_complex Aminoacyl-tRNA_biosynthesis endoplasmic reticulum membrane, hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07774.12 | DUF1620 | 636 | 853 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0072546 | ER membrane protein complex |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.