PH01003559G0130's details annotation
1.Annotation
ICBR annotation: 60S ribosomal protein L27-3, putative, expressed
Blast result AT3G22230 : 3.80E-58
Blast annotation: Ribosomal L27e protein family
2.Location
Scaffold: PH01003559
Strand: +
| Region | Start | End |
| gene | 83490 | 86421 |
| mRNA | 83490 | 86421 |
| exon | 83490 | 86421 |
| CDS | 84373 | 84783 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000074 | Ribosome translation, structural constituent of ribosome, intracellular, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00467.28 | KOW | 7 | 35 |
| PF01777.17 | Ribosomal_L27e | 52 | 136 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | large subunit ribosomal protein L27e | ko03011 | K02901 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.