Annotation of co-expression genes

PH01003595G0090's details annotation

1.Annotation

ICBR annotation: OsIAA17 - Auxin-responsive Aux/IAA gene family member, expressed

Blast result AT4G29080 : 5.90E-55
Blast annotation: phytochrome-associated protein 2

2.Location

Scaffold: PH01003595
Strand: -

RegionStartEnd
gene6443268822
mRNA6443268822
exon6443264560
exon6504765108
exon6583465960
exon6674566977
exon6768868822
CDS6451464560
CDS6504765108
CDS6583465960
CDS6674566977
CDS6768867974

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000115Dof Transcription_Regulator(from PlantTFDB)
AUX/IAA Transcription_Regulator(from iTAK)
C2C2-Dof Transcription_Regulator(from iTAK)
TKL-Pl-4 (from iTAK)
coexpression networkCFinderM000162CAMTA Transcription_Regulator(from PlantTFDB)
AUX/IAA Transcription_Regulator(from iTAK)
Dof Transcription_Regulator(from PlantTFDB)
C2C2-Dof Transcription_Regulator(from iTAK)
AGC_RSK-2 (from iTAK)
zinc_ion_transmembrane_transport

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)AUX/IAA

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02309.15AUX_IAA30230

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005634nucleus
GO:0006355regulation of transcription, DNA-dependent
GO:0046983protein dimerization activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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